INDIGOpy: the Python implementation of INDIGO

INDIGO (INferring Drug Interactions using chemoGenomics and Orthology) is a machine learning approach for designing combination therapies. More information can be found in the INDIGO publication.

User Guide

• INDIGOpy
  • indigopy package
  • tests package
• How to use indigopy
  • Set up environment
  • Example: E. coli
  • Example: M. tuberculosis
  • Example: S. aureus
  • Example: A. baumannii
  • Extension to CARAMeL: using metabolic flux data as drug profiles
• Prepare data from XLSX file

Indices and tables

• Index

• Module Index

• Search Page